HL_6EM1_005
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 6EM1|1|1|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EM1_005 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.1058
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6EM1|1|1|U|194
6EM1|1|1|U|195
6EM1|1|1|G|196
6EM1|1|1|G|197
6EM1|1|1|A|198
6EM1|1|1|A|199
6EM1|1|1|C|200
6EM1|1|1|A|201
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- Protein MAK16
- Chain 5
- Ribosome biogenesis protein NSA1
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
- Chain x
- Ribosome production factor 1
Coloring options: