3D structure

PDB id
6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCUUGUG
Length
7 nucleotides
Bulged bases
6EM1|1|1|U|467
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6EM1|1|1|C|462
6EM1|1|1|C|463
6EM1|1|1|U|464
6EM1|1|1|U|465
6EM1|1|1|G|466
6EM1|1|1|U|467
6EM1|1|1|G|468

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 3
Protein MAK16
Chain 4
Ribosomal RNA-processing protein 1
Chain C
60S ribosomal protein L4-A
Chain F
60S ribosomal protein L7-A

Coloring options:

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