HL_6EM1_013

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

6EM1|1|1|C|544, 6EM1|1|1|U|545, 6EM1|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_013 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3398

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6EM1|1|1|G|542
6EM1|1|1|C|543
6EM1|1|1|C|544
6EM1|1|1|U|545
6EM1|1|1|C|546
6EM1|1|1|G|547
6EM1|1|1|G|548
6EM1|1|1|U|549

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A