HL_6EM1_017

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

6EM1|1|1|A|709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_017 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3501

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6EM1|1|1|U|707
6EM1|1|1|G|708
6EM1|1|1|A|709
6EM1|1|1|A|710
6EM1|1|1|A|711
6EM1|1|1|G|712

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain J

rRNA-processing protein EBP2