HL_6EM1_023

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_023 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1732

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6EM1|1|1|G|1126
6EM1|1|1|G|1127
6EM1|1|1|U|1128
6EM1|1|1|A|1129
6EM1|1|1|A|1130
6EM1|1|1|G|1131
6EM1|1|1|C|1132

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain s

Nuclear GTP-binding protein NUG1