HL_6EM1_028

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_028 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1058

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6EM1|1|1|C|1403
6EM1|1|1|G|1404
6EM1|1|1|U|1405
6EM1|1|1|A|1406
6EM1|1|1|A|1407
6EM1|1|1|G|1408

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

Protein MAK16

Chain e

60S ribosomal protein L32