HL_6EM1_030
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 6EM1|1|1|G|2371, 6EM1|1|1|A|2372, 6EM1|1|1|A|2373
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EM1_030 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.1885
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6EM1|1|1|G|2369
6EM1|1|1|G|2370
6EM1|1|1|G|2371
6EM1|1|1|A|2372
6EM1|1|1|A|2373
6EM1|1|1|C|2374
6EM1|1|1|G|2375
6EM1|1|1|G|2376
6EM1|1|1|G|2377
6EM1|1|1|C|2378
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain e
- 60S ribosomal protein L32
- Chain s
- Nuclear GTP-binding protein NUG1
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