HL_6EM1_033

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUGUUCACC

Length

11 nucleotides

Bulged bases

6EM1|1|1|G|2922

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EM1|1|1|G|2918
6EM1|1|1|A|2919
6EM1|1|1|U|2920
6EM1|1|1|U|2921
6EM1|1|1|G|2922
6EM1|1|1|U|2923
6EM1|1|1|U|2924
6EM1|1|1|C|2925
6EM1|1|1|A|2926
6EM1|1|1|C|2927
6EM1|1|1|C|2928

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L23-A

Chain b

Nucleolar GTP-binding protein 1