HL_6EM1_036
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6EM1|1|1|G|3116, 6EM1|1|1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EM1_036 not in the Motif Atlas
- Geometric match to HL_4WF9_062
- Geometric discrepancy: 0.1563
- The information below is about HL_4WF9_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6EM1|1|1|C|3110
6EM1|1|1|U|3111
6EM1|1|1|G|3112
6EM1|1|1|A|3113
6EM1|1|1|A|3114
6EM1|1|1|C|3115
6EM1|1|1|G|3116
6EM1|1|1|C|3117
6EM1|1|1|C|3118
6EM1|1|1|U|3119
6EM1|1|1|C|3120
6EM1|1|1|U|3121
6EM1|1|1|A|3122
6EM1|1|1|A|3123
6EM1|1|1|G|3124
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L16-A
- Chain W
- Ribosome assembly factor MRT4
- Chain r
- Ribosome biogenesis protein NSA2
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