HL_6EVJ_001

3D structure

PDB id

6EVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter and capped RNA primer

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UAGUAA

Length

6 nucleotides

Bulged bases

6EVJ|1|U|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EVJ_001 not in the Motif Atlas

Geometric match to HL_4WRT_001

Geometric discrepancy: 0.1087

The information below is about HL_4WRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

6EVJ|1|U|U|3
6EVJ|1|U|A|4
6EVJ|1|U|G|5
6EVJ|1|U|U|6
6EVJ|1|U|A|7
6EVJ|1|U|A|8

Current chains

Chain U

RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3')

Nearby chains

Chain D

Polymerase acidic protein

Chain E

RNA-directed RNA polymerase catalytic subunit