HL_6F4H_003

3D structure

PDB id

6F4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Drosophila melanogaster SNF/U1-SL2 complex

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

CAUUGCACCUCG

Length

12 nucleotides

Bulged bases

6F4H|1|F|C|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6F4H_003 not in the Motif Atlas

Geometric match to HL_6F4H_001

Geometric discrepancy: 0.0985

The information below is about HL_6F4H_001

Detailed Annotation

U1 small nuclear ribonucleoprotein A binding hairpin

Broad Annotation

No text annotation

Motif group

HL_33074.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6F4H|1|F|C|6
6F4H|1|F|A|7
6F4H|1|F|U|8
6F4H|1|F|U|9
6F4H|1|F|G|10
6F4H|1|F|C|11
6F4H|1|F|A|12
6F4H|1|F|C|13
6F4H|1|F|C|14
6F4H|1|F|U|15
6F4H|1|F|C|16
6F4H|1|F|G|17

Current chains

Chain F

U1-SL2

Nearby chains

Chain E

U1 small nuclear ribonucleoprotein A