HL_6F5O_001

3D structure

PDB id

6F5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

A mechanism for the activation of the influenza virus transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UAGUAA

Length

6 nucleotides

Bulged bases

6F5O|1|V|U|6

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6F5O_001 not in the Motif Atlas

Geometric match to HL_5FMZ_001

Geometric discrepancy: 0.0642

The information below is about HL_5FMZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

6F5O|1|V|U|3
6F5O|1|V|A|4
6F5O|1|V|G|5
6F5O|1|V|U|6
6F5O|1|V|A|7
6F5O|1|V|A|8

Current chains

Chain V

5' promoter vRNA

Nearby chains

Chain A

Polymerase acidic protein

Chain B

RNA-directed RNA polymerase catalytic subunit