3D structure

PDB id
6FAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AAUGUAAAUACCU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FAI_014 not in the Motif Atlas
Homologous match to HL_4V88_199
Geometric discrepancy: 0.11
The information below is about HL_4V88_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.1
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6FAI|1|2|A|520
6FAI|1|2|A|521
6FAI|1|2|U|522
6FAI|1|2|G|523
6FAI|1|2|U|524
6FAI|1|2|A|525
6FAI|1|2|A|526
6FAI|1|2|A|527
6FAI|1|2|U|528
6FAI|1|2|A|529
6FAI|1|2|C|530
6FAI|1|2|C|531
6FAI|1|2|U|532

Current chains

Chain 2
20S ribosomal RNA

Nearby chains

Chain E
40S ribosomal protein S4-A
Chain J
40S ribosomal protein S9-A
Chain Y
40S ribosomal protein S24-A
Chain k
Ribosome biogenesis protein TSR1

Coloring options:


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