HL_6FAI_015
3D structure
- PDB id
- 6FAI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGCAAGUCUGGUGCCAGCAGC
- Length
- 21 nucleotides
- Bulged bases
- 6FAI|1|2|A|556, 6FAI|1|2|U|558, 6FAI|1|2|C|565, 6FAI|1|2|C|566, 6FAI|1|2|A|567, 6FAI|1|2|A|570
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FAI_015 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2336
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6FAI|1|2|G|552
6FAI|1|2|G|553
6FAI|1|2|C|554
6FAI|1|2|A|555
6FAI|1|2|A|556
6FAI|1|2|G|557
6FAI|1|2|U|558
6FAI|1|2|C|559
6FAI|1|2|U|560
6FAI|1|2|G|561
6FAI|1|2|G|562
6FAI|1|2|U|563
6FAI|1|2|G|564
6FAI|1|2|C|565
6FAI|1|2|C|566
6FAI|1|2|A|567
6FAI|1|2|G|568
6FAI|1|2|C|569
6FAI|1|2|A|570
6FAI|1|2|G|571
6FAI|1|2|C|572
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain J
- 40S ribosomal protein S9-A
- Chain X
- 40S ribosomal protein S23-A
- Chain e
- 40S ribosomal protein S30-A
- Chain k
- Ribosome biogenesis protein TSR1
- Chain l
- Serine/threonine-protein kinase RIO2
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