HL_6FHH_001

3D structure

PDB id

6FHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter bound to a 22-mer modified Pol II CTD peptide with serine 5 thiophosphorylated.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAGUAA

Length

6 nucleotides

Bulged bases

6FHH|1|V|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FHH_001 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.0552

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6FHH|1|V|U|3
6FHH|1|V|A|4
6FHH|1|V|G|5
6FHH|1|V|U|6
6FHH|1|V|A|7
6FHH|1|V|A|8

Current chains

Chain V

RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*GP*GP*G)-3')

Nearby chains

Chain A

Polymerase acidic protein

Chain B

RNA-directed RNA polymerase catalytic subunit