HL_6FKR_011

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6FKR|1|1A|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_011 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0569

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6FKR|1|1A|G|327
6FKR|1|1A|U|328
6FKR|1|1A|G|329
6FKR|1|1A|A|330
6FKR|1|1A|A|331
6FKR|1|1A|A|332
6FKR|1|1A|G|333
6FKR|1|1A|C|334
6FKR|1|1A|C|335

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24