HL_6FKR_039

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6FKR|1|1A|A|1614, 6FKR|1|1A|A|1616, 6FKR|1|1A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_039 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.087

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6FKR|1|1A|C|1612
6FKR|1|1A|G|1613
6FKR|1|1A|A|1614
6FKR|1|1A|C|1615
6FKR|1|1A|A|1616
6FKR|1|1A|C|1617
6FKR|1|1A|A|1618
6FKR|1|1A|G|1619

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1W

50S ribosomal protein L22

Chain 1y

Tur1A peptide