HL_6FKR_100
3D structure
- PDB id
- 6FKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 6FKR|1|1a|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FKR_100 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1018
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6FKR|1|1a|G|1356
6FKR|1|1a|A|1357
6FKR|1|1a|U|1358
6FKR|1|1a|C|1359
6FKR|1|1a|A|1360
6FKR|1|1a|G|1361
6FKR|1|1a|C|1362
6FKR|1|1a|C|1363
6FKR|1|1a|A|1363|||A
6FKR|1|1a|U|1364
6FKR|1|1a|G|1365
6FKR|1|1a|C|1366
Current chains
- Chain 1a
- 16 ribosomal RNA
Nearby chains
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1m
- 30S ribosomal protein S13
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1u
- 30S ribosomal protein Thx
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