HL_6FKR_130

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUGGCUUAGAAGCAGCCAUC

Length

21 nucleotides

Bulged bases

6FKR|1|2A|C|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FKR|1|2A|G|1059
6FKR|1|2A|U|1060
6FKR|1|2A|U|1061
6FKR|1|2A|G|1062
6FKR|1|2A|G|1063
6FKR|1|2A|C|1064
6FKR|1|2A|U|1065
6FKR|1|2A|U|1066
6FKR|1|2A|A|1067
6FKR|1|2A|G|1068
6FKR|1|2A|A|1069
6FKR|1|2A|A|1070
6FKR|1|2A|G|1071
6FKR|1|2A|C|1072
6FKR|1|2A|A|1073
6FKR|1|2A|G|1074
6FKR|1|2A|C|1075
6FKR|1|2A|C|1076
6FKR|1|2A|A|1077
6FKR|1|2A|U|1078
6FKR|1|2A|C|1079

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25