HL_6FKR_132

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

6FKR|1|2A|A|1174, 6FKR|1|2A|U|1175, 6FKR|1|2A|G|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_132 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.156

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6FKR|1|2A|G|1170
6FKR|1|2A|G|1171
6FKR|1|2A|G|1173
6FKR|1|2A|A|1174
6FKR|1|2A|U|1175
6FKR|1|2A|G|1176
6FKR|1|2A|A|1177
6FKR|1|2A|C|1178
6FKR|1|2A|C|1179

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2V

50S ribosomal protein L21