HL_6FKR_185

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_185 not in the Motif Atlas

Homologous match to HL_4LFB_013

Geometric discrepancy: 0.1355

The information below is about HL_4LFB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FKR|1|2a|G|521
6FKR|1|2a|C|522
6FKR|1|2a|A|523
6FKR|1|2a|G|524
6FKR|1|2a|C|525
6FKR|1|2a|C|526
6FKR|1|2a|7MG|527
6FKR|1|2a|C|528

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12