HL_6FKR_194

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_194 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1753

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6FKR|1|2a|U|1012
6FKR|1|2a|G|1013
6FKR|1|2a|A|1014
6FKR|1|2a|A|1015
6FKR|1|2a|A|1016
6FKR|1|2a|G|1017

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19