HL_6FKR_199

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_199 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.1364

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6FKR|1|2a|C|1165
6FKR|1|2a|G|1166
6FKR|1|2a|A|1168
6FKR|1|2a|A|1169
6FKR|1|2a|A|1170
6FKR|1|2a|G|1171

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2