HL_6FQ3_001

3D structure

PDB id

6FQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

UCCAA

Length

5 nucleotides

Bulged bases

6FQ3|1|B|C|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55359.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

6FQ3|1|B|U|5
6FQ3|1|B|C|6
6FQ3|1|B|C|7
6FQ3|1|B|A|8
6FQ3|1|B|A|9

Current chains

Chain B

RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3')

Nearby chains

Chain A

E3 ubiquitin-protein ligase TRIM71