HL_6FT6_040

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

6FT6|1|1|C|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FT6_040 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.0938

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6FT6|1|1|C|1792
6FT6|1|1|C|1793
6FT6|1|1|G|1794
6FT6|1|1|U|1795
6FT6|1|1|G|1796

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A