HL_6FTI_008

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6FTI|1|u|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_008 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3072

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6FTI|1|u|U|204
6FTI|1|u|C|205
6FTI|1|u|U|206
6FTI|1|u|G|207
6FTI|1|u|A|208
6FTI|1|u|U|209
6FTI|1|u|C|210
6FTI|1|u|G|211

Current chains

Chain u

28S rRNA

Nearby chains

Chain 1

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1

Chain Y

Ribosomal protein L26

Chain e

eL32