HL_6FTI_013

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_013 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0848

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6FTI|1|u|C|368
6FTI|1|u|G|369
6FTI|1|u|U|370
6FTI|1|u|A|371
6FTI|1|u|A|372
6FTI|1|u|G|373

Current chains

Chain u

28S rRNA

Nearby chains

Chain C

Ribosomal protein L4

Chain j

Ribosomal protein L37

Chain l

eL39