HL_6FTI_027

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6FTI|1|u|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_027 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.2919

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6FTI|1|u|C|1763
6FTI|1|u|G|1764
6FTI|1|u|A|1765
6FTI|1|u|A|1766
6FTI|1|u|A|1767
6FTI|1|u|C|1768
6FTI|1|u|G|1769

Current chains

Chain u

28S rRNA

Nearby chains