HL_6FTI_039
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 6FTI|1|u|U|2530, 6FTI|1|u|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTI_039 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.1147
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6FTI|1|u|G|2523
6FTI|1|u|U|2524
6FTI|1|u|U|2525
6FTI|1|u|C|2526
6FTI|1|u|A|2527
6FTI|1|u|G|2528
6FTI|1|u|A|2529
6FTI|1|u|U|2530
6FTI|1|u|C|2531
6FTI|1|u|C|2532
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain R
- eL19
- Chain X
- uL23
- Chain g
- eL34
- Chain l
- eL39
- Chain x
- Protein transport protein Sec61 subunit alpha isoform 1
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