HL_6FTI_058

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

6FTI|1|u|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_058 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.35

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6FTI|1|u|G|4139
6FTI|1|u|C|4140
6FTI|1|u|G|4141
6FTI|1|u|C|4142
6FTI|1|u|G|4143
6FTI|1|u|C|4144
6FTI|1|u|C|4145

Current chains

Chain u

28S rRNA

Nearby chains