HL_6FTI_061

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_061 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1177

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6FTI|1|u|G|4250
6FTI|1|u|A|4251
6FTI|1|u|C|4252
6FTI|1|u|A|4253
6FTI|1|u|G|4254
6FTI|1|u|A|4255
6FTI|1|u|A|4256
6FTI|1|u|A|4257
6FTI|1|u|C|4258

Current chains

Chain u

28S rRNA

Nearby chains

Chain J

Ribosomal protein L11