HL_6FTI_062
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTI_062 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.1166
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
6FTI|1|u|C|4270
6FTI|1|u|A|4271
6FTI|1|u|G|4272
6FTI|1|u|A|4273
6FTI|1|u|A|4274
6FTI|1|u|G|4275
6FTI|1|u|G|4276
6FTI|1|u|G|4277
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain T
- eL21
- Chain o
- eL42
- Chain q
- Transfer RNA; tRNA
Coloring options: