HL_6FTI_064

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_064 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0655

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6FTI|1|u|U|4321
6FTI|1|u|G|4322
6FTI|1|u|A|4323
6FTI|1|u|A|4324
6FTI|1|u|A|4325
6FTI|1|u|G|4326

Current chains

Chain u

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain o

eL42