HL_6FTI_072

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6FTI|1|u|G|4694, 6FTI|1|u|C|4698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_072 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1424

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

6FTI|1|u|C|4688
6FTI|1|u|U|4689
6FTI|1|u|G|4690
6FTI|1|u|A|4691
6FTI|1|u|A|4692
6FTI|1|u|C|4693
6FTI|1|u|G|4694
6FTI|1|u|C|4695
6FTI|1|u|C|4696
6FTI|1|u|U|4697
6FTI|1|u|C|4698
6FTI|1|u|U|4699
6FTI|1|u|A|4700
6FTI|1|u|A|4701
6FTI|1|u|G|4702

Current chains

Chain u

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40