HL_6FTI_073

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_073 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1256

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6FTI|1|u|G|4907
6FTI|1|u|G|4908
6FTI|1|u|A|4909
6FTI|1|u|G|4910
6FTI|1|u|A|4911
6FTI|1|u|G|4912
6FTI|1|u|G|4913
6FTI|1|u|C|4914

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13