HL_6FTI_074

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6FTI|1|u|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_074 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1181

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6FTI|1|u|G|4975
6FTI|1|u|U|4976
6FTI|1|u|A|4977
6FTI|1|u|G|4978
6FTI|1|u|A|4979
6FTI|1|u|C|4980
6FTI|1|u|G|4981
6FTI|1|u|A|4982
6FTI|1|u|C|4983

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31