HL_6FTJ_004

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6FTJ|1|u|G|134, 6FTJ|1|u|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_004 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1393

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6FTJ|1|u|C|131
6FTJ|1|u|G|132
6FTJ|1|u|C|133
6FTJ|1|u|G|134
6FTJ|1|u|G|135
6FTJ|1|u|C|136
6FTJ|1|u|G|137

Current chains

Chain u

28S rRNA

Nearby chains

Chain N

Ribosomal protein L15

Chain h

uL29

Chain j

Ribosomal protein L37

Chain w

5.8S ribosomal RNA; 5.8S rRNA