HL_6FTJ_005

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6FTJ|1|u|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3072

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6FTJ|1|u|U|204
6FTJ|1|u|C|205
6FTJ|1|u|U|206
6FTJ|1|u|G|207
6FTJ|1|u|A|208
6FTJ|1|u|U|209
6FTJ|1|u|C|210
6FTJ|1|u|G|211

Current chains

Chain u

28S rRNA

Nearby chains

Chain 1

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1

Chain Y

Ribosomal protein L26

Chain e

eL32