HL_6FTJ_033

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6FTJ|1|u|G|2421, 6FTJ|1|u|U|2425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_033 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2286

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6FTJ|1|u|A|2420
6FTJ|1|u|G|2421
6FTJ|1|u|C|2422
6FTJ|1|u|A|2423
6FTJ|1|u|G|2424
6FTJ|1|u|U|2425
6FTJ|1|u|U|2426

Current chains

Chain u

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39