HL_6FTJ_038

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_038 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.1034

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6FTJ|1|u|G|2578
6FTJ|1|u|G|2579
6FTJ|1|u|U|2580
6FTJ|1|u|A|2581
6FTJ|1|u|A|2582
6FTJ|1|u|C|2583

Current chains

Chain u

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

eL34