HL_6FTJ_042

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

6FTJ|1|u|C|2739

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_042 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1112

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6FTJ|1|u|C|2738
6FTJ|1|u|C|2739
6FTJ|1|u|U|2740
6FTJ|1|u|U|2741
6FTJ|1|u|G|2742

Current chains

Chain u

28S rRNA

Nearby chains

Chain A

uL2

Chain p

Ribosomal protein L37a