HL_6FTJ_054

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCGAGG

Length

6 nucleotides

Bulged bases

6FTJ|1|u|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_054 not in the Motif Atlas

Geometric match to HL_5J7L_171

Geometric discrepancy: 0.2453

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6FTJ|1|u|C|4102
6FTJ|1|u|C|4103
6FTJ|1|u|G|4104
6FTJ|1|u|A|4105
6FTJ|1|u|G|4106
6FTJ|1|u|G|4107

Current chains

Chain u

28S rRNA

Nearby chains