HL_6FTJ_056

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6FTJ|1|u|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1129

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6FTJ|1|u|C|4193
6FTJ|1|u|U|4194
6FTJ|1|u|G|4195
6FTJ|1|u|G|4196
6FTJ|1|u|G|4197
6FTJ|1|u|G|4198
6FTJ|1|u|C|4199
6FTJ|1|u|G|4200
6FTJ|1|u|G|4201

Current chains

Chain u

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain b

60S ribosomal protein L29