HL_6FTJ_071

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6FTJ|1|u|U|4976

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0816

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6FTJ|1|u|G|4975
6FTJ|1|u|U|4976
6FTJ|1|u|A|4977
6FTJ|1|u|G|4978
6FTJ|1|u|A|4979
6FTJ|1|u|C|4980
6FTJ|1|u|G|4981
6FTJ|1|u|A|4982
6FTJ|1|u|C|4983

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31