HL_6FYX_001
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAG(H2U)GGAAG
- Length
- 9 nucleotides
- Bulged bases
- 6FYX|1|1|G|18, 6FYX|1|1|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FYX_001 not in the Motif Atlas
- Homologous match to HL_5UD5_001
- Geometric discrepancy: 0.3085
- The information below is about HL_5UD5_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_89167.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 21
Unit IDs
6FYX|1|1|C|13
6FYX|1|1|A|14
6FYX|1|1|G|15
6FYX|1|1|H2U|16
6FYX|1|1|G|18
6FYX|1|1|G|19
6FYX|1|1|A|20
6FYX|1|1|A|21
6FYX|1|1|G|22
Current chains
- Chain 1
- tRNAi
Nearby chains
- Chain Z
- KLLA0B06182p
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor 5
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