HL_6FYX_005
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 6FYX|1|2|U|74, 6FYX|1|2|U|75, 6FYX|1|2|U|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FYX_005 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.1944
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.11
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 25
Unit IDs
6FYX|1|2|C|70
6FYX|1|2|A|71
6FYX|1|2|A|72
6FYX|1|2|U|73
6FYX|1|2|U|74
6FYX|1|2|U|75
6FYX|1|2|A|76
6FYX|1|2|U|77
6FYX|1|2|A|78
6FYX|1|2|C|79
6FYX|1|2|A|80
6FYX|1|2|G|81
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
Coloring options: