HL_6FYX_017

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYX_017 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1222

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6FYX|1|2|A|519
6FYX|1|2|A|520
6FYX|1|2|U|521
6FYX|1|2|G|522
6FYX|1|2|U|523
6FYX|1|2|A|524
6FYX|1|2|A|525
6FYX|1|2|A|526
6FYX|1|2|U|527
6FYX|1|2|A|528
6FYX|1|2|C|529
6FYX|1|2|C|530
6FYX|1|2|U|531

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24