HL_6FYX_026

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUUUCUUAUGA

Length

12 nucleotides

Bulged bases

6FYX|1|2|U|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYX|1|2|U|1053
6FYX|1|2|U|1054
6FYX|1|2|U|1055
6FYX|1|2|U|1056
6FYX|1|2|U|1057
6FYX|1|2|C|1058
6FYX|1|2|U|1059
6FYX|1|2|U|1060
6FYX|1|2|A|1061
6FYX|1|2|U|1062
6FYX|1|2|G|1063
6FYX|1|2|A|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1

Chain R

KLLA0B01474p

Chain b

40S ribosomal protein S27

Chain o

Eukaryotic translation initiation factor 3 subunit A

Chain q

eIF3c,eIF3c