HL_6FYY_003

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAUCG(1MA)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_003 not in the Motif Atlas

Homologous match to HL_1YFG_003

Geometric discrepancy: 0.2641

The information below is about HL_1YFG_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|1|G|53
6FYY|1|1|A|54
6FYY|1|1|U|55
6FYY|1|1|C|56
6FYY|1|1|G|57
6FYY|1|1|1MA|58
6FYY|1|1|A|59
6FYY|1|1|A|60
6FYY|1|1|C|61

Current chains

Chain 1

tRNAi

Nearby chains

Chain j

Eukaryotic translation initiation factor 2 subunit alpha