HL_6FYY_017

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_017 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1323

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6FYY|1|2|A|519
6FYY|1|2|A|520
6FYY|1|2|U|521
6FYY|1|2|G|522
6FYY|1|2|U|523
6FYY|1|2|A|524
6FYY|1|2|A|525
6FYY|1|2|A|526
6FYY|1|2|U|527
6FYY|1|2|A|528
6FYY|1|2|C|529
6FYY|1|2|C|530
6FYY|1|2|U|531

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24